Software

    SCRuB       
SCRuB
Source-tracking for Contamination Removal in microBiomes
In silico removal of contamination from microbial count data using process controls.
Austin et al., Nature Biotechnology 2023.

DEBIAS-M   
DEBIAS-M
Domain adaptation with phenotype Estimation and Batch Integration Across Studies of the Microbiome
Correction of processing bias across microbiome batches and studies.
Austin et al., Nature Microbiology 2025


  RebalancedCV  
RebalancedCV
Cross validation while accounting for distributional bias.
Austin et al., arXiv 2025.


    SLICE    
SLICE
Site-Level Independent Cross-Evaluation
Unbiased cross validation in complex experimental settings.
Austin et al., under review.